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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
38
ATAC-seq
37
DNase-seq
10
total RNA-seq
6
Hi-C
5
RRBS
3
single cell RNA-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
76
DNA accessibility
67
DNA binding
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
13
control
1
RNA binding protein
1
transcription factor
Date released
45
June, 2019
35
February, 2023
26
August, 2017
26
October, 2019
13
July, 2019
12
May, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
122
bed narrowPeak
97
bigWig
93
bam
72
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
171
Homo sapiens
Biosample type
155
tissue
cell line
16
primary cell
Organ
851
pancreas
683
connective tissue
490
adipose tissue
442
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
171
AMP
Genome assembly (visualization)
117
GRCh38
102
hg19
Lab
171
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
August, 2018
biosample_type!
cell line
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
single cell RNA-seq
small RNA-seq
WGBS
pCHi-C
snATAC-seq
tissue
coronary artery
5
36
2
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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