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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
28
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
182
DNA accessibility
28
DNA binding
1
3D chromatin structure
Target of assay
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
163
June, 2019
21
August, 2017
9
November, 2018
6
October, 2019
5
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2202
bam
1918
bigWig
1330
tsv
888
bed narrowPeak
792
fastq
589
bigBed narrowPeak
224
bed broadPeak
222
bigBed broadPeak
214
bed bed3+
161
txt
75
tagAlign
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
214
Homo sapiens
Biosample type
193
tissue
primary cell
17
in vitro differentiated cells
3
cell line
1
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
19
connective tissue
18
ureter
17
pancreas
7
liver
6
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
embryo
1
spleen
Project
214
AMP
Genome assembly (visualization)
206
GRCh38
198
hg19
Lab
212
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2018
biosample_type!
primary cell
target.investigated_as!
histone
BIOSAMPLE
ASSAY
214 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 42 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
1
See all biosamples
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