Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
6
DNase-seq
Assay category
79
DNA binding
6
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1427
bam
1347
bigWig
977
fastq
786
bed narrowPeak
521
tsv
434
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
85
bed broadPeak
85
bigBed broadPeak
44
bed bed3+
12
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
85
Homo sapiens
Biosample type
59
cell line
tissue
25
primary cell
1
in vitro differentiated cells
Organ
58
liver
8
epithelium
8
vasculature
6
blood vessel
6
brain
4
vein
2
connective tissue
1
pancreas
Project
85
AMP
Genome assembly (visualization)
85
hg19
67
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2018
June, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
+ See 1 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download