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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
71
ATAC-seq
71
single cell RNA-seq
70
ChIP-seq
47
WGBS
3
Hi-C
Assay category
152
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
255
fastq
191
bam
189
bigWig
105
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
343
Homo sapiens
Biosample type
505
tissue
343
primary cell
92
cell line
3
in vitro differentiated cells
Organ
402
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
191
AMP
152
HPAP
Genome assembly (visualization)
189
GRCh38
182
hg19
Lab
191
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
August, 2018
files.file_type!
tar
BIOSAMPLE
ASSAY
343 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
35
10
13
31
1
pancreatic beta cell
21
23
12
13
16
1
pancreatic acinar cell
4
9
11
8
1
pancreatic ductal cell
4
4
10
13
pancreatic endocrine cell
23
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