Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
722
ChIP-seq
260
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
MeRIP-seq
Assay category
1155
Transcription
722
DNA binding
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
255
August, 2017
215
October, 2019
172
August, 2021
170
May, 2020
163
June, 2019
120
July, 2018
93
May, 2019
91
February, 2023
77
July, 2019
70
November, 2017
66
April, 2019
59
May, 2022
47
September, 2023
45
October, 2018
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
36
December, 2017
25
February, 2020
23
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1772
bigWig
1740
bam
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2425
Homo sapiens
Biosample type
2433
tissue
1050
primary cell
578
cell line
353
in vitro differentiated cells
9
stem cell
Organ
523
connective tissue
470
pancreas
464
adipose tissue
315
liver
297
heart
240
brain
231
kidney
117
blood vessel
117
vasculature
105
limb
77
musculature of body
70
bone element
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2336
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1856
GRCh38
1751
hg19
Lab
2146
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2018
files.file_type!
txt
target.investigated_as!
control
BIOSAMPLE
ASSAY
2433 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
RNA microarray
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
286
58
68
1
6
7
4
3
1
1
2
adipose tissue
382
1
3
3
1
liver
167
102
20
2
1
3
1
1
1
1
kidney
21
75
13
51
6
1
1
1
heart left ventricle
3
29
2
3
18
4
1
1
1
+ See 175 more…
See all biosamples
Download