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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
1
DNA accessibility
Date released
89
February, 2021
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3086
bam
2882
bigWig
1604
bed narrowPeak
1350
tsv
1214
fastq
1025
bigBed narrowPeak
354
tagAlign
321
bed broadPeak
284
bigBed broadPeak
245
bed bed3+
153
zippedFastqFolder
101
txt
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
Organism
100
Homo sapiens
Biosample type
100
tissue
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
101
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
month_released!
August, 2018
August, 2021
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
101 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
cell line
MIN6
1
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