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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
4
WGBS
3
small RNA-seq
2
DNase-seq
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
8
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
55
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
August, 2018
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
487
Homo sapiens
Biosample type
485
tissue
2
primary cell
Organ
933
pancreas
753
liver
675
connective tissue
509
epithelium
487
adipose tissue
293
heart
284
brain
228
vasculature
223
blood vessel
220
kidney
159
bone element
139
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
487
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2018
August, 2021
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
2
3
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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