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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
39
DNA binding
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
312
August, 2021
276
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
73
July, 2019
66
May, 2022
59
November, 2019
54
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
4
March, 2019
4
March, 2023
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
103
bed narrowPeak
64
xls
57
txt
45
bam
44
bigWig
20
tagAlign
2
bed bed3+
1
vcf
Organism
311
Homo sapiens
Biosample type
227
tissue
43
cell line
42
in vitro differentiated cells
primary cell
Organ
129
kidney
92
heart
30
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
3
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
312
AMP
Genome assembly (visualization)
102
GRCh38
55
hg19
Lab
147
AMP-T2D consortium
127
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
August, 2018
assay_slims!
3D chromatin structure
biosample_type!
primary cell
BIOSAMPLE
ASSAY
312 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
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