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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
68
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
185
Transcription
82
DNA accessibility
68
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
128
tsv
127
bed narrowPeak
79
bam
73
bigWig
64
xls
57
txt
30
fastq
24
tagAlign
21
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
348
Homo sapiens
Biosample type
236
tissue
67
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
40
liver
18
blood
18
bodily fluid
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
349
AMP
Genome assembly (visualization)
131
GRCh38
86
hg19
Lab
181
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
August, 2018
BIOSAMPLE
ASSAY
349 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
14
18
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
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