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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
34
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
34
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
broad histone mark
1
RNA binding protein
Date released
649
February, 2021
356
November, 2017
341
May, 2020
320
May, 2021
302
August, 2017
254
October, 2019
218
August, 2021
200
May, 2022
175
June, 2019
169
February, 2023
168
July, 2018
88
November, 2018
83
July, 2019
79
December, 2017
59
September, 2020
57
March, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
48
May, 2019
47
September, 2023
35
December, 2018
31
February, 2018
26
January, 2019
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
April, 2019
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
bed narrowPeak
64
xls
57
txt
42
bam
39
bigWig
31
tsv
17
tagAlign
4
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
217
Homo sapiens
Biosample type
137
tissue
43
cell line
35
in vitro differentiated cells
3
primary cell
Organ
130
kidney
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
218
AMP
Genome assembly (visualization)
98
GRCh38
53
hg19
Lab
128
Katalin Susztak, Upenn
51
AMP-T2D consortium
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
August, 2018
target.investigated_as!
broad histone mark
organ_slims!
heart
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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