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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
25
DNase-seq
22
ATAC-seq
Assay category
47
DNA accessibility
45
DNA binding
Target of assay
36
histone
36
histone modification
20
narrow histone mark
16
broad histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
45
June, 2019
19
August, 2017
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
1
November, 2020
Available data
586
bigWig
579
bam
403
fastq
278
bed narrowPeak
265
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
92
Homo sapiens
Biosample type
499
tissue
355
cell line
92
primary cell
17
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
92
AMP
Genome assembly (visualization)
89
GRCh38
86
hg19
Lab
92
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
August, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
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