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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
243
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
285
DNA accessibility
274
DNA binding
245
Transcription
57
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
47
June, 2019
36
February, 2021
34
October, 2019
23
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
503
bigWig
497
bam
289
bed narrowPeak
281
fastq
166
tsv
103
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
888
Homo sapiens
Biosample type
2383
tissue
888
primary cell
596
cell line
390
in vitro differentiated cells
10
stem cell
Organ
336
epithelium
272
pancreas
37
vasculature
36
kidney
35
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
444
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
518
hg19
426
GRCh38
Lab
409
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2018
organ_slims!
heart
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
888 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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