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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
243
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
429
Transcription
285
DNA accessibility
269
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
230
histone
230
histone modification
122
broad histone mark
108
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
54
August, 2017
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
595
bigWig
589
bam
401
fastq
284
bed narrowPeak
263
tsv
153
zippedFastqFolder
102
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1067
Homo sapiens
Biosample type
2458
tissue
1067
primary cell
570
cell line
375
in vitro differentiated cells
8
stem cell
Organ
399
epithelium
339
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
538
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
610
hg19
518
GRCh38
Lab
503
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2018
organ_slims!
heart
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
1067 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
10
31
1
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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