Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
243
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
22
DNase-seq
17
pCHi-C
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
429
Transcription
278
DNA accessibility
251
DNA binding
56
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
43
June, 2019
23
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
573
bigWig
564
bam
400
fastq
268
bed narrowPeak
263
tsv
153
zippedFastqFolder
100
tagAlign
82
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
26
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1037
Homo sapiens
Biosample type
2375
tissue
1037
primary cell
596
cell line
392
in vitro differentiated cells
10
stem cell
Organ
403
epithelium
343
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
508
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
586
hg19
503
GRCh38
Lab
473
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2018
organ_slims!
heart
vasculature
BIOSAMPLE
ASSAY
1037 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
10
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 83 more…
See all biosamples
Download