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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
72
ChIP-seq
8
snATAC-seq
6
WGBS
3
ATAC-seq
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
72
DNA binding
11
DNA accessibility
6
DNA methylation
Target of assay
30
control
30
histone
30
histone modification
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
12
July, 2019
8
January, 2021
3
January, 2019
3
November, 2018
2
February, 2020
2
January, 2018
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
1
October, 2019
Available data
502
bam
480
bigWig
401
tsv
103
fastq
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
491
Homo sapiens
Biosample type
475
tissue
10
primary cell
7
cell line
Organ
729
pancreas
608
connective tissue
477
adipose tissue
370
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
484
AMP
8
T1D
Genome assembly (visualization)
414
hg19
413
GRCh38
Lab
484
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
12
missing controlled_by
month_released!
August, 2018
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
492 results
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total RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
+ See 1 more…
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
cell line
GM12878
6
1
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