Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
133
ChIP-seq
8
snATAC-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
133
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
12
July, 2019
8
January, 2021
2
February, 2020
2
January, 2018
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
502
bam
480
bigWig
401
tsv
103
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
558
Homo sapiens
Biosample type
488
tissue
61
cell line
10
primary cell
Organ
943
pancreas
791
liver
683
connective tissue
521
epithelium
490
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
551
AMP
8
T1D
Genome assembly (visualization)
481
hg19
478
GRCh38
Lab
551
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2018
BIOSAMPLE
ASSAY
559 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 2 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
See all biosamples
Download