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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
279
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
470
DNA accessibility
279
DNA binding
196
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
179
August, 2021
163
June, 2019
101
February, 2021
82
February, 2023
71
August, 2017
52
October, 2019
47
September, 2023
46
July, 2019
44
October, 2018
43
December, 2017
40
May, 2022
29
March, 2020
26
May, 2019
26
November, 2018
23
May, 2020
21
November, 2019
20
April, 2019
19
April, 2020
14
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
540
bam
464
bed narrowPeak
355
bigWig
249
bigBed narrowPeak
206
fastq
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
151
tsv
98
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1115
Homo sapiens
Biosample type
1118
tissue
601
primary cell
511
cell line
145
in vitro differentiated cells
8
stem cell
Organ
229
kidney
203
heart
149
pancreas
121
liver
96
bone element
72
blood vessel
72
vasculature
66
limb
64
brain
59
adipose tissue
59
connective tissue
52
musculature of body
51
artery
35
eye
20
lung
19
spleen
18
ureter
14
nerve
13
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1030
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
469
GRCh38
421
hg19
Lab
883
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
August, 2018
target.investigated_as!
histone modification
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1118 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
7
75
64
13
6
1
1
1
islet of Langerhans
20
68
6
1
7
4
3
1
1
4
liver
80
20
1
2
3
1
1
1
1
bone element
84
coronary artery
3
36
2
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