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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
101
DNA binding
Target of assay
786
histone modification
785
histone
490
transcription factor
403
narrow histone mark
381
broad histone mark
305
control
101
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
35
November, 2017
21
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
May, 2021
5
May, 2024
4
April, 2019
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
98
bigWig
97
bed narrowPeak
95
bam
86
bigBed narrowPeak
85
fastq
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
101
Homo sapiens
Biosample type
64
cell line
28
tissue
5
primary cell
4
in vitro differentiated cells
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
101
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
95
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
August, 2018
May, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 9 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac fibroblast
1
cardiac muscle cell
1
in vitro differentiated cells
adipocyte
4
See all biosamples
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