Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Date released
32
June, 2019
7
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
38
bigWig
37
bam
33
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
53
Homo sapiens
Biosample type
53
tissue
primary cell
Organ
504
connective tissue
452
pancreas
416
adipose tissue
281
kidney
251
heart
229
liver
158
bone element
120
blood vessel
120
vasculature
105
artery
81
epithelium
56
brain
56
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
August, 2020
assay_slims!
DNA binding
biosample_type!
primary cell
BIOSAMPLE
ASSAY
53 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
See all biosamples
Download