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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
193
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
281
DNA accessibility
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
359
bigWig
308
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
799
Homo sapiens
Biosample type
1870
tissue
799
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
304
epithelium
266
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
364
AMP
314
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
378
hg19
322
GRCh38
Lab
362
AMP-T2D consortium
314
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
28
audit script error
month_released!
August, 2020
October, 2022
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
799 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
30
12
31
monocyte
54
15
1
1
pancreatic beta cell
21
21
12
16
exocrine cell
39
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