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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
7
ChIP-seq
4
Hi-C
2
pCHi-C
2
total RNA-seq
Assay category
10
DNA accessibility
7
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
5
February, 2023
5
November, 2019
4
December, 2017
4
March, 2020
4
October, 2019
3
May, 2021
Available data
101
bam
93
bigWig
tsv
13
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
25
Homo sapiens
Biosample type
88
tissue
53
cell line
37
primary cell
25
in vitro differentiated cells
Organ
4
connective tissue
4
embryo
4
epithelium
Project
25
AMP
Genome assembly (visualization)
21
hg19
12
GRCh38
Lab
24
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
August, 2020
files.file_type!
tsv
BIOSAMPLE
ASSAY
25 results
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ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
cardiomyocytes (cardiac muscle cell)
1
2
1
immature adipocyte
2
2
cardiomyocytes
3
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