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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
21
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
275
Transcription
197
DNA accessibility
190
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
173
histone
173
histone modification
92
broad histone mark
81
narrow histone mark
15
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
35
June, 2019
30
August, 2017
18
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
4
March, 2020
3
December, 2017
3
March, 2023
3
November, 2017
2
June, 2018
1
January, 2018
1
November, 2018
1
October, 2019
Available data
385
bigWig
370
bam
191
bed narrowPeak
175
fastq
158
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
19
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
690
Homo sapiens
Biosample type
2762
tissue
682
primary cell
583
cell line
370
in vitro differentiated cells
10
stem cell
Organ
epithelium
339
pancreas
40
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
313
AMP
204
T1D
172
HPAP
2
community
1
ITG
Genome assembly (visualization)
404
hg19
314
GRCh38
1
hg18
Lab
278
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
2
Anna Gloyn, Oxford
1
ITG
Audit category:
45
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
692 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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