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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
907
DNA binding
470
DNA accessibility
27
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
279
August, 2017
242
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1907
bam
1772
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
374
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2671
Homo sapiens
Biosample type
2679
tissue
1071
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
360
liver
312
heart
296
kidney
264
brain
133
blood vessel
133
vasculature
122
limb
78
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2582
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1859
GRCh38
1746
hg19
Lab
2327
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2020
assay_title!
RRBS
RNA microarray
BIOSAMPLE
ASSAY
2679 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
heart left ventricle
3
35
2
3
18
4
1
1
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