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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
95
ATAC-seq
35
total RNA-seq
4
DNase-seq
4
pCHi-C
2
snATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
195
DNA binding
101
DNA accessibility
36
Transcription
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
214
bed narrowPeak
186
bam
160
bigWig
49
tagAlign
47
bigBed narrowPeak
12
tsv
5
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
337
Homo sapiens
Biosample type
337
tissue
122
primary cell
36
cell line
24
in vitro differentiated cells
Organ
87
brain
69
limb
61
artery
61
blood vessel
61
vasculature
52
eye
44
heart
42
nerve
21
pancreas
14
epithelium
8
bone element
8
skeleton
6
liver
4
gonad
4
kidney
4
ovary
3
connective tissue
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
319
AMP
18
T1D
Genome assembly (visualization)
196
GRCh38
196
hg19
Lab
319
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
month_released!
August, 2020
BIOSAMPLE
ASSAY
337 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
snATAC-seq
Hi-C
single cell RNA-seq
tissue
islet of Langerhans
21
24
19
4
2
tibial nerve
35
1
4
2
coronary artery
35
tibial artery
23
1
2
retina
15
2
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