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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
73
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
498
bam
481
bigWig
457
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
543
Homo sapiens
Biosample type
544
tissue
96
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
544
connective tissue
485
adipose tissue
485
pancreas
358
liver
286
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
544
AMP
Genome assembly (visualization)
479
hg19
478
GRCh38
Lab
544
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2020
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
544 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
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