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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
2
pCHi-C
1
Hi-C
Assay category
8
Transcription
1
3D chromatin structure
Date released
6
February, 2021
2
March, 2020
1
March, 2019
1
November, 2018
1
September, 2018
Available data
3392
bam
3162
bigWig
1817
bed narrowPeak
1600
tsv
1351
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
7
tissue
2
in vitro differentiated cells
2
primary cell
Organ
5
kidney
1
liver
1
pancreas
Project
11
AMP
Genome assembly (visualization)
3
hg19
Lab
10
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
2
inconsistent ontology term
month_released!
August, 2020
BIOSAMPLE
ASSAY
11 results
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single cell RNA-seq
pCHi-C
Hi-C
tissue
kidney
5
islet of Langerhans
1
liver
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
pancreatic cell
2
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