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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
79
DNA binding
18
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
8
control
7
chromatin remodeller
7
histone
7
histone modification
6
broad histone mark
3
other context
3
other post-translational modification
1
narrow histone mark
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
105
fastq
102
bam
94
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
105
Homo sapiens
Biosample type
61
cell line
43
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
12
brain
12
pancreas
10
spleen
2
adipose tissue
2
connective tissue
Project
105
AMP
Genome assembly (visualization)
93
GRCh38
84
hg19
Lab
104
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
August, 2020
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
brain
9
2
spleen
6
1
1
2
body of pancreas
2
4
2
liver
4
2
pancreas
2
1
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primary cell
pancreatic cell
1
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