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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
51
ATAC-seq
23
DNase-seq
17
WGBS
1
Hi-C
Assay category
96
DNA binding
74
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Target of assay
87
histone
87
histone modification
56
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
August, 2021
54
November, 2017
40
May, 2024
35
February, 2023
23
June, 2019
11
May, 2023
9
July, 2019
9
November, 2018
August, 2020
3
September, 2020
2
August, 2017
1
March, 2023
1
October, 2017
Available data
154
bed narrowPeak
140
bigWig
98
bam
79
bigBed narrowPeak
40
tagAlign
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
1
hic
Organism
188
Homo sapiens
Biosample type
172
tissue
11
primary cell
5
cell line
Organ
84
heart
64
brain
37
blood vessel
37
vasculature
35
artery
18
kidney
9
epithelium
9
pancreas
5
liver
3
connective tissue
2
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
184
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
hg19
3015
GRCh38
5
hg18
Lab
133
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
11
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
1
ITG
month_released!
August, 2020
August, 2021
assembly!
hg19
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
tissue
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
kidney
11
+ See 26 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
pancreatic alpha cell
2
cardiac fibroblast
1
chondrocytes
1
+ See 3 more…
cell line
HepG2
4
1
See all biosamples
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