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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
single cell RNA-seq
1
small RNA-seq
Assay category
123
DNA binding
66
DNA accessibility
17
Transcription
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
157
bigWig
132
bam
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
19
tsv
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
221
Homo sapiens
Biosample type
221
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
546
connective tissue
503
pancreas
487
adipose tissue
361
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
Genome assembly (visualization)
191
GRCh38
113
hg19
Lab
181
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
August, 2020
August, 2021
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
single cell RNA-seq
small RNA-seq
tissue
heart left ventricle
35
2
3
3
4
1
1
1
coronary artery
5
36
2
1
left cardiac atrium
40
1
heart
14
18
4
1
1
1
1
heart right ventricle
13
1
1
2
1
1
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