Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
134
total RNA-seq
40
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
pCHi-C
Assay category
184
DNA binding
136
Transcription
40
DNA accessibility
2
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
39
February, 2018
29
December, 2017
26
February, 2021
16
February, 2023
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
289
bam
257
bigWig
141
fastq
132
bed narrowPeak
127
tsv
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
369
Homo sapiens
Biosample type
2176
tissue
971
primary cell
369
in vitro differentiated cells
296
cell line
6
stem cell
Organ
94
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
369
AMP
Genome assembly (visualization)
274
hg19
248
GRCh38
4
hg18
Lab
315
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
August, 2020
March, 2020
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
369 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
6
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 30 more…
See all biosamples
Download