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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
89
total RNA-seq
10
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
171
DNA binding
89
Transcription
15
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
298
fastq
293
bam
277
bigWig
147
bed narrowPeak
89
tsv
85
tagAlign
47
bigBed narrowPeak
41
bed broadPeak
35
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
271
Homo sapiens
Biosample type
178
tissue
51
primary cell
48
in vitro differentiated cells
Organ
164
pancreas
65
connective tissue
22
epithelium
18
liver
17
adipose tissue
13
musculature of body
Project
277
AMP
Genome assembly (visualization)
275
hg19
252
GRCh38
Lab
277
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
BIOSAMPLE
ASSAY
277 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
3
pancreatic beta cell
7
3
pancreatic acinar cell
2
in vitro differentiated cells
adipocyte
47
1
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