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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
30
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
Assay category
66
DNA binding
31
Transcription
16
DNA accessibility
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
28
transcription factor
17
broad histone mark
15
narrow histone mark
9
control
5
nucleotide modification
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
112
bam
108
fastq
107
bigWig
78
bed narrowPeak
45
bigBed narrowPeak
30
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
124
Homo sapiens
Biosample type
79
primary cell
34
cell line
11
tissue
Organ
82
pancreas
67
epithelium
27
blood
27
bodily fluid
7
spleen
6
connective tissue
1
liver
Project
124
AMP
Genome assembly (visualization)
108
GRCh38
108
hg19
Lab
114
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
32
missing controlled_by
month_released!
August, 2020
BIOSAMPLE
ASSAY
124 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
tissue
spleen
7
islet of Langerhans
4
See all biosamples
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