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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
42
ATAC-seq
3
Hi-C
Assay category
177
Transcription
90
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
August, 2020
3
October, 2022
Available data
162
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
317
Homo sapiens
Biosample type
317
primary cell
Organ
145
epithelium
145
pancreas
Project
317
HPAP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
2368
AMP-T2D consortium
317
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
August, 2020
organ_slims!
urinary bladder
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
317 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
24
1
pancreatic beta cell
11
16
14
1
exocrine cell
39
pancreatic acinar cell
4
1
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