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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
control
Date released
23
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
43
Homo sapiens
Biosample type
40
tissue
3
primary cell
Organ
795
pancreas
621
connective tissue
457
adipose tissue
411
epithelium
325
liver
239
heart
238
kidney
159
bone element
131
vasculature
130
blood vessel
128
brain
107
artery
54
eye
43
musculature of body
30
embryo
21
limb
20
lung
16
skeleton
9
blood
9
bodily fluid
7
vein
6
nerve
5
gonad
5
ovary
4
spleen
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
26
hg19
7
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
August, 2020
target.investigated_as!
control
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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