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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
478
Transcription
DNA binding
173
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
57
May, 2021
55
February, 2023
42
November, 2019
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
11
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
491
bam
462
bigWig
416
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
723
Homo sapiens
Biosample type
386
tissue
276
primary cell
61
cell line
Organ
723
pancreas
526
connective tissue
417
adipose tissue
392
epithelium
226
liver
172
kidney
167
heart
159
bone element
128
vasculature
125
blood vessel
105
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
541
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
495
hg19
478
GRCh38
Lab
504
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
64
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
month_released!
August, 2021
assay_slims!
DNA binding
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
723 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
283
58
7
4
1
2
1
1
body of pancreas
3
4
2
4
2
pancreas
2
2
4
2
1
1
1
1
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
6
1
Panc1
1
1
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