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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
5
single cell RNA-seq
1
Hi-C
Assay category
38
Transcription
19
DNA accessibility
DNA binding
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
5
July, 2018
4
March, 2020
3
November, 2019
August, 2021
Available data
40
bigWig
39
bam
39
tsv
5
fastq
1
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
64
Homo sapiens
Biosample type
59
cell line
5
primary cell
Organ
84
bone element
64
epithelium
64
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
62
AMP
2
T1D
Genome assembly (visualization)
42
hg19
39
GRCh38
Lab
58
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
64
inconsistent ontology term
4
audit script error
month_released!
August, 2021
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
64 results
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total RNA-seq
ATAC-seq
MeRIP-seq
single cell RNA-seq
Hi-C
cell line
EndoC_BH1
33
19
6
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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