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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
DNA binding
114
DNA accessibility
Target of assay
3
control
Date released
90
May, 2020
65
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
24
June, 2019
18
July, 2019
7
October, 2019
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
367
Homo sapiens
Biosample type
1185
tissue
367
primary cell
128
in vitro differentiated cells
109
cell line
Organ
150
epithelium
124
pancreas
24
connective tissue
16
kidney
9
vasculature
8
brain
8
liver
7
blood vessel
7
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
271
AMP
96
T1D
Genome assembly (visualization)
360
hg19
318
GRCh38
Lab
271
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
month_released!
August, 2021
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
367 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
15
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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