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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
total RNA-seq
144
single cell RNA-seq
122
ATAC-seq
76
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
76
DNA accessibility
Date released
27
February, 2021
21
May, 2022
16
January, 2021
10
April, 2020
August, 2021
2
February, 2023
Available data
27
fastq
21
zippedFastqFolder
Organism
75
Homo sapiens
Biosample type
56
primary cell
20
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
Project
48
HPAP
18
T1D
10
LungMap
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
AMP-T2D consortium
Audit category:
27
audit script error
month_released!
August, 2021
assay_slims!
DNA binding
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
76 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
pancreas
4
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