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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
1
DNA methylation
Date released
33
June, 2019
9
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
52
Homo sapiens
Biosample type
49
tissue
3
primary cell
Organ
722
pancreas
525
connective tissue
417
adipose tissue
387
epithelium
224
liver
168
kidney
165
heart
159
bone element
127
vasculature
125
blood vessel
105
artery
66
brain
56
limb
55
eye
52
musculature of body
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
August, 2021
assay_title!
ChIP-seq
RRBS
BIOSAMPLE
ASSAY
52 results
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DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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