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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Date released
144
May, 2020
40
May, 2022
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
190
bigWig
171
bam
165
tsv
28
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
226
Homo sapiens
Biosample type
206
tissue
10
cell line
10
primary cell
Organ
724
pancreas
526
connective tissue
417
adipose tissue
393
epithelium
226
liver
172
kidney
167
heart
159
bone element
128
vasculature
125
blood vessel
105
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
226
AMP
Genome assembly (visualization)
195
hg19
171
GRCh38
Lab
186
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
month_released!
August, 2021
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
5
1
1
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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