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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
55
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
42
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
66
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
24
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
68
Homo sapiens
Biosample type
68
tissue
Organ
934
pancreas
753
liver
678
connective tissue
510
epithelium
490
adipose tissue
298
heart
283
brain
225
vasculature
224
kidney
219
blood vessel
159
bone element
139
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
68
AMP-T2D consortium
month_released!
August, 2021
assay_title!
Hi-C
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
2
1
spleen
20
1
1
2
1
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