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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
604
ChIP-seq
196
ATAC-seq
178
DNase-seq
86
RNA microarray
68
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1071
Transcription
604
DNA binding
400
DNA accessibility
38
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2021
211
August, 2017
202
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
73
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
39
November, 2019
33
March, 2020
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1685
bam
1519
bigWig
977
tsv
667
bed narrowPeak
357
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2227
Homo sapiens
Biosample type
2231
tissue
953
primary cell
597
cell line
299
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
459
pancreas
335
liver
195
brain
161
heart
161
kidney
158
bone element
90
blood vessel
90
vasculature
84
limb
60
musculature of body
57
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2134
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1553
GRCh38
1546
hg19
Lab
2030
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
August, 2021
assay_title!
Hi-C
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2231 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
297
57
68
1
4
7
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
2
1
3
1
1
1
kidney
17
11
13
56
1
1
bone element
84
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