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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1788
ChIP-seq
1459
total RNA-seq
455
ATAC-seq
257
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
257
Transcription
75
DNA methylation
Target of assay
3
control
Date released
August, 2021
75
May, 2022
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
24
February, 2021
15
July, 2019
9
April, 2020
9
August, 2017
8
November, 2018
3
August, 2018
3
December, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
September, 2018
Available data
145
fastq
118
bam
117
bigWig
113
tsv
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
5
txt
Organism
332
Homo sapiens
Biosample type
234
primary cell
95
tissue
2
in vitro differentiated cells
1
cell line
Organ
125
pancreas
117
epithelium
56
kidney
10
connective tissue
9
heart
9
lung
6
adipose tissue
6
liver
3
brain
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
144
AMP
132
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
117
GRCh38
100
hg19
Lab
141
AMP-T2D consortium
132
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
332 results
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single cell RNA-seq
WGBS
primary cell
Langerhans cell
85
pancreatic alpha cell
12
31
pancreatic beta cell
12
16
pancreatic acinar cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
56
lung
9
heart left ventricle
4
liver
1
3
adipose tissue
3
+ See 11 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
See all biosamples
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