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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
171
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
25
May, 2019
12
July, 2019
7
October, 2017
Available data
183
bam
182
bigWig
169
bed narrowPeak
94
bigBed narrowPeak
82
tagAlign
14
bed broadPeak
13
fastq
12
tsv
6
bigBed broadPeak
1
tagAlign bed3+
Organism
185
Homo sapiens
Biosample type
176
tissue
9
primary cell
Organ
627
pancreas
557
connective tissue
523
liver
422
adipose tissue
274
epithelium
236
heart
185
brain
180
vasculature
178
blood vessel
124
artery
66
bone element
62
kidney
60
limb
54
blood
54
bodily fluid
29
nerve
21
embryo
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
185
AMP
Genome assembly (visualization)
185
GRCh38
142
hg19
Lab
185
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
August, 2021
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 67 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
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