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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
107
ChIP-seq
7
ATAC-seq
1
DNase-seq
Assay category
120
Transcription
107
DNA binding
8
DNA accessibility
Target of assay
65
histone
65
histone modification
37
transcription factor
33
narrow histone mark
31
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
49
August, 2017
38
December, 2017
31
February, 2018
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
235
bam
223
bigWig
120
tsv
118
fastq
105
bed narrowPeak
19
bed bed3+
15
bigBed narrowPeak
5
tagAlign
1
bed broadPeak
1
bigBed broadPeak
Organism
235
Homo sapiens
Biosample type
1795
tissue
533
primary cell
456
cell line
235
in vitro differentiated cells
3
stem cell
Organ
54
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
235
AMP
Genome assembly (visualization)
264
hg19
235
GRCh38
4
hg18
Lab
235
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
August, 2021
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
hepatocyte
14
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