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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
357
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
67
histone modification
66
histone
51
RNA binding protein
39
narrow histone mark
27
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
528
bam
525
bigWig
364
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
8
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
528
Homo sapiens
Biosample type
268
cell line
238
tissue
14
in vitro differentiated cells
8
primary cell
Organ
635
pancreas
566
connective tissue
528
liver
424
adipose tissue
291
epithelium
266
heart
217
brain
191
vasculature
187
blood vessel
141
kidney
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
21
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
528
AMP
Genome assembly (visualization)
607
hg19
528
GRCh38
Lab
528
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
528 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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