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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
165
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
268
August, 2017
260
May, 2020
247
November, 2017
217
October, 2019
183
June, 2019
164
July, 2018
92
May, 2019
91
July, 2019
73
December, 2017
72
September, 2018
62
April, 2019
August, 2021
58
November, 2019
50
November, 2018
49
April, 2018
45
February, 2023
39
May, 2022
36
October, 2018
32
March, 2020
31
February, 2018
28
December, 2018
20
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
262
bigWig
247
fastq
244
bam
135
bed narrowPeak
89
tsv
40
bigBed narrowPeak
39
bed broadPeak
38
tagAlign
31
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
262
Homo sapiens
Biosample type
178
tissue
45
in vitro differentiated cells
45
primary cell
Organ
157
pancreas
60
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
268
AMP
Genome assembly (visualization)
268
hg19
242
GRCh38
Lab
268
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
25
89
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
44
1
primary cell
skeletal muscle myoblast
13
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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