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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1828
ChIP-seq
1459
total RNA-seq
455
ATAC-seq
250
single cell RNA-seq
212
DNase-seq
84
RNA microarray
75
WGBS
57
pCHi-C
49
snATAC-seq
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
Transcription
Date released
84
February, 2021
18
July, 2019
August, 2021
Available data
84
txt
18
bam
18
bigWig
18
tsv
Organism
102
Homo sapiens
Biosample type
100
tissue
2
primary cell
Organ
84
bone element
4
brain
3
adipose tissue
3
connective tissue
3
liver
2
musculature of body
2
pancreas
1
heart
1
kidney
Project
102
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
102
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
audit script error
month_released!
August, 2021
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
102 results
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RNA microarray
small RNA-seq
tissue
bone element
84
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
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primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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