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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
Assay category
55
Transcription
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
5
May, 2019
3
July, 2019
August, 2021
2
June, 2019
1
February, 2020
Available data
76
bam
64
bigWig
55
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
66
cell line
44
tissue
2
primary cell
Organ
863
pancreas
755
liver
660
connective tissue
489
adipose tissue
429
epithelium
295
heart
283
brain
229
vasculature
224
blood vessel
201
kidney
139
artery
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
112
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
112
AMP-T2D consortium
month_released!
August, 2021
audit.ERROR.category!
inconsistent ontology term
organ_slims!
limb
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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