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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
Assay category
56
Transcription
49
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
855
pancreas
755
liver
660
connective tissue
489
adipose tissue
428
epithelium
295
heart
283
brain
229
vasculature
224
blood vessel
201
kidney
139
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
139
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
139
AMP-T2D consortium
month_released!
August, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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